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-  ​* Auto3DEM +====== Software for analysis of data from cryo-electron microscopy ====== 
-  * IHRSR+ + 
-  * Chimera ​plugins +This site contains software that has been developed over the years by members at the Laboratory of Tim Baker.  
-  * Scripts + 
-  * Other+  ​[[auto3dem:​home|Auto3DEM]]: package for semi-automated 3D image reconstruction by single particle analysis 
 +  * [[autortm:​home|AutoRTM]]:​ automatic, on-the-fly reconstruction of icosahedral particles from a single micrograph 
 +  * [[localFSC|LocalFSC]]:​ a plugin for Chimera ​to estimate the resolution in selected regions of EM maps 
 +  * [[ihrsr|IHRSR++]]:​ user-friendly extension to the Iterative Helical Real Space Reconstruction (IHRSR) software. 
 +  * [[http://​bakerlab.ucsd.edu/​programs-old.shtm|Old programs]]: software not maintained anymore.