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ihrsr [2015/03/23 15:27]
gcardone created
ihrsr [2015/03/23 16:07]
gcardone
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-**IHRSR++**+====== ​IHRSR++ ​======
  
 IHRSR++ is a user-friendly extension to Ed Egelman'​s Iterative Helical Real Space Reconstruction (IHRSR) software. IHRSR++ is a user-friendly extension to Ed Egelman'​s Iterative Helical Real Space Reconstruction (IHRSR) software.
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 IHRSR++ also contains a number of Perl and Spider scripts for performing common preprocessing and data manipulation tasks such as power spectra calculations,​ application of CTF corrections,​ image stack generation, image centering, and tube diameter determination. IHRSR++ also contains a number of Perl and Spider scripts for performing common preprocessing and data manipulation tasks such as power spectra calculations,​ application of CTF corrections,​ image stack generation, image centering, and tube diameter determination.
  
 +===== Downloads =====
 +Below are the versions available. For each one is indicated the Spider version it has been tested against. Instructions for installation are in the file //​IHRSR_readme.txt//​ provided with the software.
 +
 +[[http://​cryoem.ucsd.edu/​programs/​code/​IHRSR_v1.5.tar.gz|IHRSR++ v. 1.5]], Jan 27 2014 (Spider v. 21.02)
 +
 +[[http://​cryoem.ucsd.edu/​programs/​code/​IHRSR_v1.4.tar.gz|IHRSR++ v. 1.4]], May 3  2010 (Spider v. 17.05)
 +
 +[[http://​cryoem.ucsd.edu/​programs/​code/​IHRSR_v1.3.tar.gz|IHRSR++ v. 1.3]], Feb 5  2010 (Spider v. 17.05)
 +
 +===== Tutorial =====
 +A test data set is provided together with a tutorial which describes the procedure to get from the raw micrographs to a helical reconstruction.
 +
 +[[http://​cryoem.ucsd.edu/​programs/​IHRSR++tutorial_v1.5.pdf|Tutorial]] (pdf)
 +
 +[[http://​cryoem.ucsd.edu/​programs/​code/​IHRSR_test_prob.tar.gz|Test Dataset]] (**~5 GB file**)
 +-------------------------
 +
 +===== License =====
 IHRSR++ is free software, licensed under the [[http://​www.opensource.org/​licenses/​bsd-license.php|BSD]] license. IHRSR++ is free software, licensed under the [[http://​www.opensource.org/​licenses/​bsd-license.php|BSD]] license.
  
-**Disclaimer**: Although we have successfully used it for a number of reconstructions,​ it should be considered a work in progress. Owing to time constraints,​ neither the Egelman nor Baker labs are able to provide support. The software is provided purely as a convenience to those attempting helical reconstructions. ​+===== Disclaimer ​===== 
 +Although we have successfully used it for a number of reconstructions,​ it should be considered a work in progress. Owing to time constraints,​ neither the Egelman nor Baker labs are able to provide support. The software is provided purely as a convenience to those attempting helical reconstructions
 + 
 +===== Credits ===== 
 +The package was originally developed by Bob Sinkovits and Kristin Parent, with the help of Ed Egelmann