Differences
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autortm:home [2015/11/24 18:30] gcardone |
autortm:home [2019/06/19 16:22] (current) |
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* The installation procedure is valid both for Linux and Mac OSX systems. | * The installation procedure is valid both for Linux and Mac OSX systems. | ||
- | * Download the file [[http://cryoem.ucsd.edu/programs/code/autortm_151124.tar.gz|autortm_151124.tar.gz]] and uncompress it | + | * Download the file [[http://bakerlab.ucsd.edu/programs/code/autortm_151124.tar.gz|autortm_151124.tar.gz]] and uncompress it |
tar xvfz autortm_151124.tar.gz | tar xvfz autortm_151124.tar.gz | ||
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===== Test Data ===== | ===== Test Data ===== | ||
- | In order to get familiar with the program, here is provided a [[http://cryoem.ucsd.edu/programs/code/TestCaseAutoRTM_GLV.tar.gz|Test Dataset]] to download. The compressed archive contains few micrographs of Giardia lamblia virus (GLV) (see Janssen M.E. et al (2015) J. Virol. 89:1182-94 [[http://dx.doi.org/10.1128/jvi.02745-14]] for details on the virus and the microscopy) and two session files, ''GLVdataset.ars'' and ''GLVdatasetctf4.ars'' (for using CTFFIND4, only valid on Linux), with all the required settings. To test the program: | + | In order to get familiar with the program, here is provided a [[http://bakerlab.ucsd.edu/programs/code/TestCaseAutoRTM_GLV.tar.gz|Test Dataset]] to download. The compressed archive contains few micrographs of Giardia lamblia virus (GLV) (see Janssen M.E. et al (2015) J. Virol. 89:1182-94 [[http://dx.doi.org/10.1128/jvi.02745-14]] for details on the virus and the microscopy) and two session files, ''GLVdataset.ars'' and ''GLVdatasetctf4.ars'' (for using CTFFIND4, only valid on Linux), with all the required settings. To test the program: |
* uncompress the archive and go into the directory generated | * uncompress the archive and go into the directory generated | ||