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autortm:home [2015/11/24 18:30]
gcardone
autortm:home [2019/06/19 16:22] (current)
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   * The installation procedure is valid both for Linux and Mac OSX systems.   * The installation procedure is valid both for Linux and Mac OSX systems.
-  * Download the file [[http://cryoem.ucsd.edu/​programs/​code/​autortm_151124.tar.gz|autortm_151124.tar.gz]] and uncompress it+  * Download the file [[http://bakerlab.ucsd.edu/​programs/​code/​autortm_151124.tar.gz|autortm_151124.tar.gz]] and uncompress it
  
   tar xvfz autortm_151124.tar.gz   tar xvfz autortm_151124.tar.gz
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 ===== Test Data ===== ===== Test Data =====
-In order to get familiar with the program, here is provided a [[http://cryoem.ucsd.edu/​programs/​code/​TestCaseAutoRTM_GLV.tar.gz|Test Dataset]] to download. The compressed archive contains few micrographs of Giardia lamblia virus (GLV) (see Janssen M.E. et al (2015) J. Virol. 89:​1182-94 ​ [[http://​dx.doi.org/​10.1128/​jvi.02745-14]] for details on the virus and the microscopy) and two session files, ''​GLVdataset.ars''​ and ''​GLVdatasetctf4.ars''​ (for using CTFFIND4, only valid on Linux), with all the required settings. To test the program:+In order to get familiar with the program, here is provided a [[http://bakerlab.ucsd.edu/​programs/​code/​TestCaseAutoRTM_GLV.tar.gz|Test Dataset]] to download. The compressed archive contains few micrographs of Giardia lamblia virus (GLV) (see Janssen M.E. et al (2015) J. Virol. 89:​1182-94 ​ [[http://​dx.doi.org/​10.1128/​jvi.02745-14]] for details on the virus and the microscopy) and two session files, ''​GLVdataset.ars''​ and ''​GLVdatasetctf4.ars''​ (for using CTFFIND4, only valid on Linux), with all the required settings. To test the program:
   * uncompress the archive and go into the directory generated   * uncompress the archive and go into the directory generated