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auto3dem:userguide [2016/01/19 12:56]
admin [auto]
auto3dem:userguide [2016/01/19 13:04] (current)
admin [auto]
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 **freeze_res**:​ non-zero value freezes the resolutions used in PPFT, and PO2R (resolution used in P3DR will still be based on the results from PSF). **freeze_res**:​ non-zero value freezes the resolutions used in PPFT, and PO2R (resolution used in P3DR will still be based on the results from PSF).
  
-**fsc_cutoff**:​ cutoff value for FSC used in estimating map resolution. ​if not specified it is set either to 0.143 (gold_standard set to 1) or to 0.5(gold_stadard ​set to 0).+**fsc_cutoff**:​ cutoff value for FSC used in estimating map resolution. ​If not specified it is set either to 0.143 (gold_standard set to 1) or to 0.5 (gold_standard ​set to 0).
  
-**fsc_hithresh**:​ cutoff value for FSC used in filtering the map.+**fsc_hithresh**:​ cutoff value for FSC used to set resolution limits ​in PPFT and PO2R.
  
-**fsc_lothresh**:​ cutoff value for FSC used to set resolution limits ​in P3DR, PSF, and PO2R.+**fsc_lothresh**:​ cutoff value for FSC used in filtering the map in P3DR.
  
 **gauss_adj**:​ parameter used to set width of Gaussian falloff in P3DR (reciprocal angstroms). **gauss_adj**:​ parameter used to set width of Gaussian falloff in P3DR (reciprocal angstroms).
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 | auto | freeze_annulus | 0 | | auto | freeze_annulus | 0 |
 | auto | freeze_res | 0 | | auto | freeze_res | 0 |
 +| auto | fsc_cutoff | 0.143 if gold_standard=1,​ 0.5 otherwise |
 | auto | fsc_hithresh | 0.5 | | auto | fsc_hithresh | 0.5 |
 | auto | fsc_lothresh | 0.3 | | auto | fsc_lothresh | 0.3 |