Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
auto3dem:userguide [2016/01/19 12:58] admin [auto] |
auto3dem:userguide [2016/01/19 13:04] admin [auto] |
||
|---|---|---|---|
| Line 238: | Line 238: | ||
| **fsc_cutoff**: cutoff value for FSC used in estimating map resolution. If not specified it is set either to 0.143 (gold_standard set to 1) or to 0.5 (gold_standard set to 0). | **fsc_cutoff**: cutoff value for FSC used in estimating map resolution. If not specified it is set either to 0.143 (gold_standard set to 1) or to 0.5 (gold_standard set to 0). | ||
| - | **fsc_hithresh**: cutoff value for FSC used in filtering the map. | + | **fsc_hithresh**: cutoff value for FSC used to set resolution limits in PPFT and PO2R. |
| - | **fsc_lothresh**: cutoff value for FSC used to set resolution limits in P3DR, PSF, and PO2R. | + | **fsc_lothresh**: cutoff value for FSC used in filtering the map in P3DR. |
| **gauss_adj**: parameter used to set width of Gaussian falloff in P3DR (reciprocal angstroms). | **gauss_adj**: parameter used to set width of Gaussian falloff in P3DR (reciprocal angstroms). | ||
| Line 571: | Line 571: | ||
| | auto | freeze_annulus | 0 | | | auto | freeze_annulus | 0 | | ||
| | auto | freeze_res | 0 | | | auto | freeze_res | 0 | | ||
| + | | auto | fsc_cutoff | 0.143 if gold_standard=1, 0.5 otherwise | | ||
| | auto | fsc_hithresh | 0.5 | | | auto | fsc_hithresh | 0.5 | | ||
| | auto | fsc_lothresh | 0.3 | | | auto | fsc_lothresh | 0.3 | | ||