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auto3dem:extra_tools [2015/12/22 19:18] gcardone |
auto3dem:extra_tools [2019/06/19 16:22] (current) |
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| === a3dm_icosrotate === | === a3dm_icosrotate === | ||
| Rotate an icosahedral map from standard orientation to one with a pair of vertices positioned along the z axis. The opposite rotation can be applied using the option ''--inverse''. | Rotate an icosahedral map from standard orientation to one with a pair of vertices positioned along the z axis. The opposite rotation can be applied using the option ''--inverse''. | ||
| - | The program can be used on a map, a single .dat file or on a master/continue file. In the last case it reads the configuration and applies the rotation to the particles parameters of all the .dat files listed and to the reference map(s). The program automatically identifies which input type is given. Currently, the main limitation is that it is not possible to specify which vertex to place along the z-axis. [[http://cryoem.ucsd.edu/programs/code/emd_5946b6.pif|Here]] is provided a virus map with a connector in the assumed vertex, that can be used to familiarize with the convention used by the program. | + | The program can be used on a map, a single .dat file or on a master/continue file. In the last case it reads the configuration and applies the rotation to the particles parameters of all the .dat files listed and to the reference map(s). The program automatically identifies which input type is given. Currently, the main limitation is that it is not possible to specify which vertex to place along the z-axis. [[http://bakerlab.ucsd.edu/programs/code/emd_5946b6.pif|Here]] is provided a virus map with a connector in the assumed vertex, that can be used to familiarize with the convention used by the program. |
| === a3dm_mg_inspect_prepare === | === a3dm_mg_inspect_prepare === | ||