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auto3dem:documentation:protocols:gold_standard [2015/04/14 16:49] gcardone |
auto3dem:documentation:protocols:gold_standard [2015/04/14 17:10] gcardone [Limitations] |
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| and if the handedness is different then: | and if the handedness is different then: | ||
| - modify the stack parameter files from the last iteration, for only one set, using the command //handflip//; | - modify the stack parameter files from the last iteration, for only one set, using the command //handflip//; | ||
| - | - change the handedness of the corresponding reconstruction. This can be done either recomputing the reconstruction from the modified parameter files (in the last _continue file, just set 'auto generate_map' to 'only' and launch it), or by modifying the map using an external program (e.g. using the program //bimg// from bsoft, with the option '-reslice xy-z'). | + | - change the handedness of the corresponding reconstruction. This can be done either by recomputing the reconstruction from the modified parameter files (open the last _continue file, set ''auto generate_map only'', save it and run it), or by modifying the map using Robem (open the map, go to the menu ''Manipulate/Invert 3D Map'', select ''Reflect in xy plane (z -> -z)'', and save the modified map). |
| </WRAP> | </WRAP> | ||
| <WRAP center round important 85%> | <WRAP center round important 85%> | ||