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auto3dem:documentation [2015/12/22 16:28] gcardone |
auto3dem:documentation [2019/06/19 16:22] (current) |
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* [[auto3dem:userguide|User Guide]] | * [[auto3dem:userguide|User Guide]] | ||
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+ | * [[auto3dem:extra_tools|Auxiliary programs]] | ||
* Protocols | * Protocols | ||
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* Documentation for the parallel programs called by Auto3DEM (PDFs) [:!: last updated Oct 2004] | * Documentation for the parallel programs called by Auto3DEM (PDFs) [:!: last updated Oct 2004] | ||
- | * [[http://cryoem.ucsd.edu/programs/p3dr.pdf|P3DR]] 3D image reconstruction | + | * [[http://bakerlab.ucsd.edu/programs/p3dr.pdf|P3DR]] 3D image reconstruction |
- | * [[http://cryoem.ucsd.edu/programs/pcut.pdf|PCUT]] Cutting spherical annulus from map | + | * [[http://bakerlab.ucsd.edu/programs/pcut.pdf|PCUT]] Cutting spherical annulus from map |
- | * [[http://cryoem.ucsd.edu/programs/por.pdf|POR]] Local refinement of image origins and orientations | + | * [[http://bakerlab.ucsd.edu/programs/por.pdf|POR]] Local refinement of image origins and orientations |
- | * [[http://cryoem.ucsd.edu/programs/pftsearch.pdf|PPFT]] Local refinement of image origins and orientations | + | * [[http://bakerlab.ucsd.edu/programs/pftsearch.pdf|PPFT]] Local refinement of image origins and orientations |
- | * [[http://cryoem.ucsd.edu/programs/psf.pdf|PSF]] Structure factor determination and FSC calculation | + | * [[http://bakerlab.ucsd.edu/programs/psf.pdf|PSF]] Structure factor determination and FSC calculation |
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==== RobEM === | ==== RobEM === | ||
- | * User's Guide ([[http://cryoem.ucsd.edu/programs/robem_usersguide_v4.01.pdf|PDF]]) ([[http://cryoem.ucsd.edu/programs/robem_usersguide_v4.01.htm|HTML]]) | + | * User's Guide ([[http://bakerlab.ucsd.edu/programs/robem_usersguide_v4.01.pdf|PDF]]) ([[http://bakerlab.ucsd.edu/programs/robem_usersguide_v4.01.htm|HTML]]) |