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auto3dem:documentation [2015/04/14 17:14] gcardone |
auto3dem:documentation [2019/06/19 16:22] |
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- | ====== Documentation ====== | ||
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- | ==== Auto3DEM ==== | ||
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- | * [[auto3dem:installation|Installation]] | ||
- | * User's guide ([[http://cryoem.ucsd.edu/programs/auto3dem_usersguide_v4.04.pdf|PDF]]) ([[http://cryoem.ucsd.edu/programs/auto3dem_usersguide_v4.04.htm|HTML]]) | ||
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- | * Protocols | ||
- | * [[auto3dem:documentation:protocols:asymmetric_reconstruction|Asymmetric reconstruction]] | ||
- | * [[auto3dem:documentation:protocols:gold_standard|Gold Standard procedure]] | ||
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- | * Documentation for parallel programs called by Auto3DEM (PDFs) | ||
- | * [[http://cryoem.ucsd.edu/programs/p3dr.pdf|P3DR]] 3D image reconstruction | ||
- | * [[http://cryoem.ucsd.edu/programs/pcut.pdf|PCUT]] Cutting spherical annulus from map | ||
- | * [[http://cryoem.ucsd.edu/programs/por.pdf|POR]] Local refinement of image origins and orientations | ||
- | * [[http://cryoem.ucsd.edu/programs/pftsearch.pdf|PPFT]] Local refinement of image origins and orientations | ||
- | * [[http://cryoem.ucsd.edu/programs/psf.pdf|PSF]] Structure factor determination and FSC calculation | ||
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- | ==== RobEM === | ||
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- | * User's Guide ([[http://cryoem.ucsd.edu/programs/robem_usersguide_v4.01.pdf|PDF]]) ([[http://cryoem.ucsd.edu/programs/robem_usersguide_v4.01.htm|HTML]]) | ||
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