Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision Next revision Both sides next revision | ||
|
auto3dem:documentation [2015/04/14 17:14] gcardone |
auto3dem:documentation [2015/12/22 16:28] gcardone |
||
|---|---|---|---|
| Line 4: | Line 4: | ||
| ==== Auto3DEM ==== | ==== Auto3DEM ==== | ||
| - | * [[auto3dem:installation|Installation]] | + | * [[auto3dem:install|Installation]] |
| - | * User's guide ([[http://cryoem.ucsd.edu/programs/auto3dem_usersguide_v4.04.pdf|PDF]]) ([[http://cryoem.ucsd.edu/programs/auto3dem_usersguide_v4.04.htm|HTML]]) | + | |
| + | * [[auto3dem:userguide|User Guide]] | ||
| * Protocols | * Protocols | ||
| + | * [[auto3dem:documentation:protocols:initial_model|Generating a starting model]] | ||
| + | * [[auto3dem:documentation:protocols:focused_refinement|Mask-focused refinement]] | ||
| * [[auto3dem:documentation:protocols:asymmetric_reconstruction|Asymmetric reconstruction]] | * [[auto3dem:documentation:protocols:asymmetric_reconstruction|Asymmetric reconstruction]] | ||
| * [[auto3dem:documentation:protocols:gold_standard|Gold Standard procedure]] | * [[auto3dem:documentation:protocols:gold_standard|Gold Standard procedure]] | ||
| - | + | * Documentation for the parallel programs called by Auto3DEM (PDFs) [:!: last updated Oct 2004] | |
| - | * Documentation for parallel programs called by Auto3DEM (PDFs) | + | |
| * [[http://cryoem.ucsd.edu/programs/p3dr.pdf|P3DR]] 3D image reconstruction | * [[http://cryoem.ucsd.edu/programs/p3dr.pdf|P3DR]] 3D image reconstruction | ||
| * [[http://cryoem.ucsd.edu/programs/pcut.pdf|PCUT]] Cutting spherical annulus from map | * [[http://cryoem.ucsd.edu/programs/pcut.pdf|PCUT]] Cutting spherical annulus from map | ||
| Line 18: | Line 20: | ||
| * [[http://cryoem.ucsd.edu/programs/pftsearch.pdf|PPFT]] Local refinement of image origins and orientations | * [[http://cryoem.ucsd.edu/programs/pftsearch.pdf|PPFT]] Local refinement of image origins and orientations | ||
| * [[http://cryoem.ucsd.edu/programs/psf.pdf|PSF]] Structure factor determination and FSC calculation | * [[http://cryoem.ucsd.edu/programs/psf.pdf|PSF]] Structure factor determination and FSC calculation | ||
| + | \\ | ||
| + | \\ | ||
| ==== RobEM === | ==== RobEM === | ||