Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
auto3dem:documentation [2015/12/22 16:28]
gcardone
auto3dem:documentation [2019/06/19 16:22] (current)
Line 7: Line 7:
  
   * [[auto3dem:​userguide|User Guide]]   * [[auto3dem:​userguide|User Guide]]
 +
 +  * [[auto3dem:​extra_tools|Auxiliary programs]]
  
   * Protocols   * Protocols
Line 15: Line 17:
  
   * Documentation for the parallel programs called by Auto3DEM (PDFs) [:!: last updated Oct 2004]   * Documentation for the parallel programs called by Auto3DEM (PDFs) [:!: last updated Oct 2004]
-    * [[http://cryoem.ucsd.edu/​programs/​p3dr.pdf|P3DR]] 3D image reconstruction +    * [[http://bakerlab.ucsd.edu/​programs/​p3dr.pdf|P3DR]] 3D image reconstruction 
-    * [[http://cryoem.ucsd.edu/​programs/​pcut.pdf|PCUT]] Cutting spherical annulus from map +    * [[http://bakerlab.ucsd.edu/​programs/​pcut.pdf|PCUT]] Cutting spherical annulus from map 
-    * [[http://cryoem.ucsd.edu/​programs/​por.pdf|POR]] Local refinement of image origins and orientations +    * [[http://bakerlab.ucsd.edu/​programs/​por.pdf|POR]] Local refinement of image origins and orientations 
-    * [[http://cryoem.ucsd.edu/​programs/​pftsearch.pdf|PPFT]] Local refinement of image origins and orientations +    * [[http://bakerlab.ucsd.edu/​programs/​pftsearch.pdf|PPFT]] Local refinement of image origins and orientations 
-    * [[http://cryoem.ucsd.edu/​programs/​psf.pdf|PSF]] Structure factor determination and FSC calculation+    * [[http://bakerlab.ucsd.edu/​programs/​psf.pdf|PSF]] Structure factor determination and FSC calculation
 \\ \\
 \\ \\
 ==== RobEM === ==== RobEM ===
  
-  * User's Guide ([[http://cryoem.ucsd.edu/​programs/​robem_usersguide_v4.01.pdf|PDF]]) ([[http://cryoem.ucsd.edu/​programs/​robem_usersguide_v4.01.htm|HTML]])+  * User's Guide ([[http://bakerlab.ucsd.edu/​programs/​robem_usersguide_v4.01.pdf|PDF]]) ([[http://bakerlab.ucsd.edu/​programs/​robem_usersguide_v4.01.htm|HTML]])