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| - | ====== Auto3DEM ====== | ||
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| - | Auto3DEM is a semi-automated image reconstruction system that provides all the tools to process raw micrographs acquired at an electron microscope and generate a three-dimensional reconstruction. The most intensive computational procedure like orientation search and reconstruction can be executed either in serial or in parallel on a computer cluster. A graphical interface, RobEM, is also provided both for image processing and visualization purposes. | ||
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| - | ===== Documentation ===== | ||
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| - | ===== Download ===== | ||
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| - | ===== Tutorials ===== | ||
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| - | ===== Citations ===== | ||
| - | To reference this program, please cite: | ||
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| - | Yan X., R. S. Sinkovits, and T. S. Baker (2007) AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles. J. Struct. Bio. 157:73-82. ([[http://cryoem.ucsd.edu/publication-pdfs/2007-Yan-etal-JSB.pdf|pdf]]) | ||
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| - | If you generate an initial model using the Random Model Computation method, please also cite: | ||
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| - | Yan X., K. A. Dryden, J. Tang, and T. S. Baker (2007) Ab initio random model method facilitates 3D reconstruction of icosahedral particles. J. Struct. Bio. 157:211-225. ([[http://cryoem.ucsd.edu/publication-pdfs/2007b-Yan-etal-JSB.pdf|pdf]]) | ||
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| - | ===== License ===== | ||
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| - | AUTO3DEM is free to use for educational, research and non-profit purposes (see [[auto3dem_license|LICENSE]] file). | ||
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| - | ===== Funding ===== | ||
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| - | ===== Credits ===== | ||
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| - | Tim Baker, Dan Marinescu, James Conway, David Belnap, Robert Sinkovits, Fuller, Giovanni Cardone, Xiaodong Yan, Benes Trus, Rob Ashmore | ||