====== Software for analysis of data from cryo-electron microscopy ======

This site contains software that has been developed over the years by members at the Laboratory of Tim Baker. 

  * [[auto3dem:home|Auto3DEM]]: package for semi-automated 3D image reconstruction by single particle analysis
  * [[autortm:home|AutoRTM]]: automatic, on-the-fly reconstruction of icosahedral particles from a single micrograph
  * [[localFSC|LocalFSC]]: a plugin for Chimera to estimate the resolution in selected regions of EM maps
  * [[ihrsr|IHRSR++]]: user-friendly extension to the Iterative Helical Real Space Reconstruction (IHRSR) software.


  * [[http://bakerlab.ucsd.edu/programs-old.shtm|Old programs]]: software not maintained anymore.