auto3dem [BakerLab Software]

This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong.

====== Auto3DEM ======


Auto3DEM is a semi-automated image reconstruction system that provides all the tools to process raw micrographs acquired at an electron microscope and generate a three-dimensional reconstruction. The most intensive computational procedure like orientation search and reconstruction can be executed either in serial or in parallel on a computer cluster. A graphical interface, RobEM, is also provided both for image processing and visualization purposes.


----
===== Citations =====
To reference this program, please cit:e

Yan X., R. S. Sinkovits, and T. S. Baker (2007) AUTO3DEM - an automated and high throughput program for image reconstruction of icosahedral particles. J. Struct. Bio. 157:73-82. ([[http://cryoem.ucsd.edu/publication-pdfs/2007-Yan-etal-JSB.pdf|pdf]])

If you generate an initial model using the Random Model Computation method, please also cite:

Yan X., K. A. Dryden, J. Tang, and T. S. Baker (2007) Ab initio random model method facilitates 3D reconstruction of icosahedral particles. J. Struct. Bio. 157:211-225. ([[http://cryoem.ucsd.edu/publication-pdfs/2007b-Yan-etal-JSB.pdf|pdf]])


----
===== License =====

AUTO3DEM is free to use for educational, research and non-profit purposes (see [[auto3dem_license|LICENSE]] file).