https://bakerlab.ucsd.edu/wikis/software/ 2026-05-07T19:44:11-07:00 https://bakerlab.ucsd.edu/wikis/software/ https://bakerlab.ucsd.edu/wikis/software/lib/tpl/bootstrap3/images/favicon.ico text/html 2016-01-02T17:45:22-07:00 https://bakerlab.ucsd.edu/wikis/software/start.php?id=labprograms:alifraba&rev=1451785522&do=diff alifraba alifraba (align frames in background) is a program to align frames acquired from a K2 camera by means of Leginon. The program relies on IMOD routines for the alignment of the frames (tiltxcorr, newstack and avgstack). How it works The program uses an iterative approach to determine the shift to apply to each frame against an average reference, which is refined at each iteration (see documentation on text/html 2015-12-30T21:37:57-07:00 https://bakerlab.ucsd.edu/wikis/software/start.php?id=labprograms:rawtransferd&rev=1451540277&do=diff rawtransferd Rawtransferd is a daemon server running in background on the server borg. It is responsible for monitoring the directory on the K2 computer where the frames are saved by default by Leginon, and to transfer them to borg. Each time a new stack of frames is found, the program interrogates the Leginon database, and if the stack is linked to a session, then the file is renamed according to that session and transferred.