https://bakerlab.ucsd.edu/wikis/software/ 2026-04-28T22:59:28-07:00 https://bakerlab.ucsd.edu/wikis/software/ https://bakerlab.ucsd.edu/wikis/software/lib/tpl/bootstrap3/images/favicon.ico text/html 2019-06-19T16:22:17-07:00 https://bakerlab.ucsd.edu/wikis/software/start.php?id=ihrsr&rev=1560986537&do=diff IHRSR++ IHRSR++ is a user-friendly extension to Ed Egelman's Iterative Helical Real Space Reconstruction (IHRSR) software. It includes all of the original IHRSR functionality plus the capabilities to determine out-of-plane tilt, apply dihedral symmetry, and automatically construct a starting model from the image data. text/html 2019-06-19T16:22:17-07:00 https://bakerlab.ucsd.edu/wikis/software/start.php?id=localfsc&rev=1560986537&do=diff LocalFSC LocalFSC is a plugin for Chimera to estimate the resolution in selected subregions of a EM map. The resolution is estimated by means of the Fourier Shell Correlation (FSC), calculated from two independent maps. Generally these are the maps each generated from half the particles in a data set. Selection is performed by placing markers in the regions of interest, and the size of the regions to analyse can be set either manually or automatically. Comments can be added to each measure, an… text/html 2016-03-06T12:01:20-07:00 https://bakerlab.ucsd.edu/wikis/software/start.php?id=sidebar&rev=1457294480&do=diff * Auto3DEM * Download * Documentation * AutoRTM * LocalFSC * IHRSR++ * Internal text/html 2019-06-19T16:21:59-07:00 https://bakerlab.ucsd.edu/wikis/software/start.php?id=start&rev=1560986519&do=diff Software for analysis of data from cryo-electron microscopy This site contains software that has been developed over the years by members at the Laboratory of Tim Baker. * Auto3DEM: package for semi-automated 3D image reconstruction by single particle analysis